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DEV-SERVER!! miSRA: search preprocessed public small-RNA data against your reference sequences (miRNA, tRNA, etc)
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miSRA input page for microRNA profiling.
Mature and hairpin sequence need to be provided with a nomenclature like provided by MirGeneDB, PmiREN or miRBase. The profiling will be performed as describend in sRNAbench (2014)
File upload:
mature miRNA sequences (FASTA file)
*
hairpin miRNA sequences (FASTA file)
*
SRA experiments and/or studies
Comma-separated list of SRA experiment accessions (SRX-, ERX-, DRX-[...])
Comma-separated list of SRA studies accessions (SRP-, ERP-, DRP-[...])
Optional parameters
Allowed mismatches
Minimum read count to consider a read
Run miSRA